Name | Last modified | Size | Description | |
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Parent Directory | - | |||
PF00225_full.blocks.txt | 2020-12-11 17:52 | 9.5M | ||
PF00225_seed.blocks.txt | 2020-12-11 17:52 | 49K | ||
README.autoAug | 2020-12-11 17:52 | 12K | ||
SplicedAlignment.pm | 2020-12-11 17:52 | 12K | ||
aa2nonred.pl | 2020-12-11 17:52 | 20K | ||
add_name_to_gff3.pl | 2020-12-11 17:52 | 3.4K | ||
augustify.py | 2020-12-11 17:52 | 24K | ||
augustus2browser.pl | 2020-12-11 17:52 | 3.0K | ||
augustus2gbrowse.pl | 2020-12-11 17:52 | 393 | ||
autoAug.pl | 2020-12-11 17:52 | 53K | ||
autoAugPred.pl | 2020-12-11 17:52 | 23K | ||
autoAugTrain.pl | 2020-12-11 17:52 | 45K | ||
autoRun.pathInfo | 2018-05-09 17:47 | 195 | ||
bamToWig.py | 2020-12-11 17:52 | 13K | ||
bedgraph2wig.pl | 2020-12-11 17:52 | 3.3K | ||
blat2gbrowse.pl | 2020-12-11 17:52 | 4.6K | ||
blat2hints.pl | 2020-12-11 17:52 | 32K | ||
block2prfl.pl | 2020-12-11 17:52 | 11K | ||
cegma2gff.pl | 2020-12-11 17:52 | 2.2K | ||
checkParamArchive.pl | 2020-12-11 17:52 | 3.8K | ||
checkUTR | 2020-12-11 17:52 | 1.1K | ||
cleanDOSfasta.pl | 2020-12-11 17:52 | 539 | ||
clusterAndSplitGenes.pl | 2020-12-11 17:52 | 7.4K | ||
compare_masking.pl | 2020-12-11 17:52 | 1.6K | ||
computeFlankingRegion.pl | 2020-12-11 17:52 | 2.3K | ||
createAugustusJoblist.pl | 2020-12-11 17:52 | 7.1K | ||
del_from_prfl.pl | 2020-12-11 17:52 | 3.2K | ||
evalCGP.pl | 2020-12-11 17:52 | 9.5K | ||
eval_dualdecomp.pl | 2020-12-11 17:52 | 13K | ||
eval_multi_gtf.pl | 2020-12-11 17:52 | 3.3K | ||
executeTestCGP.py | 2020-12-11 17:52 | 28K | ||
exonerate2hints.pl | 2020-12-11 17:52 | 3.0K | ||
exoniphyDb2hints.pl | 2020-12-11 17:52 | 1.3K | ||
extractAnno.py | 2020-12-11 17:52 | 4.5K | ||
extractTranscriptEnds.pl | 2020-12-11 17:52 | 511 | ||
filter-ppx.pl | 2020-12-11 17:52 | 450 | ||
filterGenes.pl | 2020-12-11 17:52 | 854 | ||
filterGenesIn.pl | 2020-12-11 17:52 | 1.0K | ||
filterGenesIn_mRNAname.pl | 2020-12-11 17:52 | 2.8K | ||
filterGenesOut_mRNAname.pl | 2020-12-11 17:52 | 1.7K | ||
filterInFrameStopCodons.pl | 2020-12-11 17:52 | 1.1K | ||
filterMaf.pl | 2020-12-11 17:52 | 2.9K | ||
filterPSL.pl | 2020-12-11 17:52 | 17K | ||
filterShrimp.pl | 2020-12-11 17:52 | 4.4K | ||
filterSpliceHints.pl | 2020-12-11 17:52 | 2.0K | ||
findGffNamesInFasta.pl | 2020-12-11 17:52 | 1.6K | ||
fix_in_frame_stop_codon_genes.py | 2020-12-11 17:52 | 38K | ||
fix_joingenes_gtf.pl | 2020-12-11 17:52 | 3.6K | ||
gbSmallDNA2gff.pl | 2020-12-11 17:52 | 3.0K | ||
gbrowse.conf | 2020-12-11 17:52 | 7.9K | ||
gbrowseold2gff3.pl | 2020-12-11 17:52 | 3.7K | ||
getAnnoFasta.pl | 2020-12-11 17:52 | 7.5K | ||
getAnnoFastaFromJoingenes.py | 2020-12-11 17:52 | 11K | ||
getLinesMatching.pl | 2020-12-11 17:52 | 2.0K | ||
get_loci_from_gb.pl | 2020-12-11 17:52 | 2.1K | ||
gff2gbSmallDNA.pl | 2020-12-11 17:52 | 19K | ||
gff2ps_mycustom | 2020-12-11 17:52 | 1.7K | ||
gffGetmRNA.pl | 2020-12-11 17:52 | 4.0K | ||
gp2othergp.pl | 2020-12-11 17:52 | 3.0K | ||
gtf2aa.pl | 2020-12-11 17:52 | 6.9K | ||
gtf2bed.pl | 2020-12-11 17:52 | 9.7K | ||
gtf2gff.pl | 2020-12-11 17:52 | 15K | ||
gth2gtf.pl | 2020-12-11 17:52 | 2.8K | ||
hal2maf_split.pl | 2020-12-11 17:52 | 13K | ||
helpMod.pm | 2020-12-11 17:52 | 9.6K | ||
intron2exex.pl | 2018-05-09 17:47 | 4.4K | ||
joinPeptides.pl | 2020-12-11 17:52 | 1.4K | ||
join_aug_pred.pl | 2020-12-11 17:52 | 8.9K | ||
join_mult_hints.pl | 2020-12-11 17:52 | 2.6K | ||
maf2conswig.pl | 2020-12-11 17:52 | 3.4K | ||
makeMatchLists.pl | 2020-12-11 17:52 | 472 | ||
makeUtrTrainingSet.pl | 2020-12-11 17:52 | 16K | ||
maskNregions.pl | 2020-12-11 17:52 | 1.6K | ||
merge_masking.pl | 2020-12-11 17:52 | 1.7K | ||
moveParameters.pl | 2020-12-11 17:52 | 2.4K | ||
msa2prfl.pl | 2020-12-11 17:52 | 20K | ||
new_species.pl | 2020-12-11 17:52 | 7.5K | ||
opt_init_and_term_probs.pl | 2020-12-11 17:52 | 6.9K | ||
optimize_augustus.pl | 2020-12-11 17:52 | 83K | ||
parseSim4Output.pl | 2020-12-11 17:52 | 3.5K | ||
partition_gtf2gb.pl | 2020-12-11 17:52 | 17K | ||
pasapolyA2hints.pl | 2020-12-11 17:52 | 2.1K | ||
peptides2alternatives.pl | 2020-12-11 17:52 | 3.3K | ||
peptides2hints.pl | 2020-12-11 17:52 | 6.6K | ||
phastconsDB2hints.pl | 2020-12-11 17:52 | 2.7K | ||
polyA2hints.pl | 2020-12-11 17:52 | 2.3K | ||
prints2prfl.pl | 2020-12-11 17:52 | 10K | ||
pslMap.pl | 2020-12-11 17:52 | 7.8K | ||
randomSplit.pl | 2020-12-11 17:52 | 1.9K | ||
ratewig.pl | 2018-05-09 17:47 | 584 | ||
retroDB2hints.pl | 2020-12-11 17:52 | 1.9K | ||
rmRedundantHints.pl | 2020-12-11 17:52 | 1.4K | ||
runAllSim4.pl | 2020-12-11 17:52 | 727 | ||
samMap.pl | 2020-12-11 17:52 | 4.9K | ||
scipiogff2gff.pl | 2020-12-11 17:52 | 1.1K | ||
selectLongestORFs.pl | 2016-03-30 17:26 | 531 | ||
setStopCodonFreqs.pl | 2020-12-11 17:52 | 2.2K | ||
simpleFastaHeaders.pl | 2020-12-11 17:52 | 1.2K | ||
simplifyFastaHeaders.pl | 2020-12-11 17:52 | 2.5K | ||
splitMfasta.pl | 2020-12-11 17:52 | 2.1K | ||
split_wiggle.pl | 2020-12-11 17:52 | 865 | ||
summarizeACGTcontent.pl | 2020-12-11 17:52 | 2.1K | ||
transMap2hints.pl | 2020-12-11 17:52 | 19K | ||
uniquePeptides.pl | 2020-12-11 17:52 | 1.9K | ||
utrgff2gbrowse.pl | 2020-12-11 17:52 | 2.3K | ||
webserver-results.body | 2018-05-09 17:47 | 2.6K | ||
webserver-results.head | 2020-12-11 17:52 | 6.2K | ||
webserver-results.tail | 2020-12-11 17:52 | 1.0K | ||
weedMaf.pl | 2020-12-11 17:52 | 1.6K | ||
wig2hints.pl | 2020-12-11 17:52 | 5.3K | ||
wigchoose.pl | 2020-12-11 17:52 | 2.8K | ||
writeResultsPage.pl | 2020-12-11 17:52 | 14K | ||
yaml2gff.1.4.pl | 2020-12-11 17:52 | 9.8K | ||