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| Name | Last modified | Size | Description |
|---|---|---|---|---|
| Parent Directory | - | ||
| PF00225_full.blocks.txt | 2020-12-11 17:52 | 9.5M | |
| PF00225_seed.blocks.txt | 2020-12-11 17:52 | 49K | |
| README.autoAug | 2020-12-11 17:52 | 12K | |
| SplicedAlignment.pm | 2020-12-11 17:52 | 12K | |
| aa2nonred.pl | 2020-12-11 17:52 | 20K | |
| add_name_to_gff3.pl | 2020-12-11 17:52 | 3.4K | |
| augustify.py | 2020-12-11 17:52 | 24K | |
| augustus2browser.pl | 2020-12-11 17:52 | 3.0K | |
| augustus2gbrowse.pl | 2020-12-11 17:52 | 393 | |
| autoAug.pl | 2020-12-11 17:52 | 53K | |
| autoAugPred.pl | 2020-12-11 17:52 | 23K | |
| autoAugTrain.pl | 2020-12-11 17:52 | 45K | |
| autoRun.pathInfo | 2018-05-09 17:47 | 195 | |
| bamToWig.py | 2020-12-11 17:52 | 13K | |
| bedgraph2wig.pl | 2020-12-11 17:52 | 3.3K | |
| blat2gbrowse.pl | 2020-12-11 17:52 | 4.6K | |
| blat2hints.pl | 2020-12-11 17:52 | 32K | |
| block2prfl.pl | 2020-12-11 17:52 | 11K | |
| cegma2gff.pl | 2020-12-11 17:52 | 2.2K | |
| checkParamArchive.pl | 2020-12-11 17:52 | 3.8K | |
| checkUTR | 2020-12-11 17:52 | 1.1K | |
| cleanDOSfasta.pl | 2020-12-11 17:52 | 539 | |
| clusterAndSplitGenes.pl | 2020-12-11 17:52 | 7.4K | |
| compare_masking.pl | 2020-12-11 17:52 | 1.6K | |
| computeFlankingRegion.pl | 2020-12-11 17:52 | 2.3K | |
| createAugustusJoblist.pl | 2020-12-11 17:52 | 7.1K | |
| del_from_prfl.pl | 2020-12-11 17:52 | 3.2K | |
| evalCGP.pl | 2020-12-11 17:52 | 9.5K | |
| eval_dualdecomp.pl | 2020-12-11 17:52 | 13K | |
| eval_multi_gtf.pl | 2020-12-11 17:52 | 3.3K | |
| executeTestCGP.py | 2020-12-11 17:52 | 28K | |
| exonerate2hints.pl | 2020-12-11 17:52 | 3.0K | |
| exoniphyDb2hints.pl | 2020-12-11 17:52 | 1.3K | |
| extractAnno.py | 2020-12-11 17:52 | 4.5K | |
| extractTranscriptEnds.pl | 2020-12-11 17:52 | 511 | |
| filter-ppx.pl | 2020-12-11 17:52 | 450 | |
| filterGenes.pl | 2020-12-11 17:52 | 854 | |
| filterGenesIn.pl | 2020-12-11 17:52 | 1.0K | |
| filterGenesIn_mRNAname.pl | 2020-12-11 17:52 | 2.8K | |
| filterGenesOut_mRNAname.pl | 2020-12-11 17:52 | 1.7K | |
| filterInFrameStopCodons.pl | 2020-12-11 17:52 | 1.1K | |
| filterMaf.pl | 2020-12-11 17:52 | 2.9K | |
| filterPSL.pl | 2020-12-11 17:52 | 17K | |
| filterShrimp.pl | 2020-12-11 17:52 | 4.4K | |
| filterSpliceHints.pl | 2020-12-11 17:52 | 2.0K | |
| findGffNamesInFasta.pl | 2020-12-11 17:52 | 1.6K | |
| fix_in_frame_stop_codon_genes.py | 2020-12-11 17:52 | 38K | |
| fix_joingenes_gtf.pl | 2020-12-11 17:52 | 3.6K | |
| gbSmallDNA2gff.pl | 2020-12-11 17:52 | 3.0K | |
| gbrowse.conf | 2020-12-11 17:52 | 7.9K | |
| gbrowseold2gff3.pl | 2020-12-11 17:52 | 3.7K | |
| getAnnoFasta.pl | 2020-12-11 17:52 | 7.5K | |
| getAnnoFastaFromJoingenes.py | 2020-12-11 17:52 | 11K | |
| getLinesMatching.pl | 2020-12-11 17:52 | 2.0K | |
| get_loci_from_gb.pl | 2020-12-11 17:52 | 2.1K | |
| gff2gbSmallDNA.pl | 2020-12-11 17:52 | 19K | |
| gff2ps_mycustom | 2020-12-11 17:52 | 1.7K | |
| gffGetmRNA.pl | 2020-12-11 17:52 | 4.0K | |
| gp2othergp.pl | 2020-12-11 17:52 | 3.0K | |
| gtf2aa.pl | 2020-12-11 17:52 | 6.9K | |
| gtf2bed.pl | 2020-12-11 17:52 | 9.7K | |
| gtf2gff.pl | 2020-12-11 17:52 | 15K | |
| gth2gtf.pl | 2020-12-11 17:52 | 2.8K | |
| hal2maf_split.pl | 2020-12-11 17:52 | 13K | |
| helpMod.pm | 2020-12-11 17:52 | 9.6K | |
| intron2exex.pl | 2018-05-09 17:47 | 4.4K | |
| joinPeptides.pl | 2020-12-11 17:52 | 1.4K | |
| join_aug_pred.pl | 2020-12-11 17:52 | 8.9K | |
| join_mult_hints.pl | 2020-12-11 17:52 | 2.6K | |
| maf2conswig.pl | 2020-12-11 17:52 | 3.4K | |
| makeMatchLists.pl | 2020-12-11 17:52 | 472 | |
| makeUtrTrainingSet.pl | 2020-12-11 17:52 | 16K | |
| maskNregions.pl | 2020-12-11 17:52 | 1.6K | |
| merge_masking.pl | 2020-12-11 17:52 | 1.7K | |
| moveParameters.pl | 2020-12-11 17:52 | 2.4K | |
| msa2prfl.pl | 2020-12-11 17:52 | 20K | |
| new_species.pl | 2020-12-11 17:52 | 7.5K | |
| opt_init_and_term_probs.pl | 2020-12-11 17:52 | 6.9K | |
| optimize_augustus.pl | 2020-12-11 17:52 | 83K | |
| parseSim4Output.pl | 2020-12-11 17:52 | 3.5K | |
| partition_gtf2gb.pl | 2020-12-11 17:52 | 17K | |
| pasapolyA2hints.pl | 2020-12-11 17:52 | 2.1K | |
| peptides2alternatives.pl | 2020-12-11 17:52 | 3.3K | |
| peptides2hints.pl | 2020-12-11 17:52 | 6.6K | |
| phastconsDB2hints.pl | 2020-12-11 17:52 | 2.7K | |
| polyA2hints.pl | 2020-12-11 17:52 | 2.3K | |
| prints2prfl.pl | 2020-12-11 17:52 | 10K | |
| pslMap.pl | 2020-12-11 17:52 | 7.8K | |
| randomSplit.pl | 2020-12-11 17:52 | 1.9K | |
| ratewig.pl | 2018-05-09 17:47 | 584 | |
| retroDB2hints.pl | 2020-12-11 17:52 | 1.9K | |
| rmRedundantHints.pl | 2020-12-11 17:52 | 1.4K | |
| runAllSim4.pl | 2020-12-11 17:52 | 727 | |
| samMap.pl | 2020-12-11 17:52 | 4.9K | |
| scipiogff2gff.pl | 2020-12-11 17:52 | 1.1K | |
| selectLongestORFs.pl | 2016-03-30 17:26 | 531 | |
| setStopCodonFreqs.pl | 2020-12-11 17:52 | 2.2K | |
| simpleFastaHeaders.pl | 2020-12-11 17:52 | 1.2K | |
| simplifyFastaHeaders.pl | 2020-12-11 17:52 | 2.5K | |
| splitMfasta.pl | 2020-12-11 17:52 | 2.1K | |
| split_wiggle.pl | 2020-12-11 17:52 | 865 | |
| summarizeACGTcontent.pl | 2020-12-11 17:52 | 2.1K | |
| transMap2hints.pl | 2020-12-11 17:52 | 19K | |
| uniquePeptides.pl | 2020-12-11 17:52 | 1.9K | |
| utrgff2gbrowse.pl | 2020-12-11 17:52 | 2.3K | |
| webserver-results.body | 2018-05-09 17:47 | 2.6K | |
| webserver-results.head | 2020-12-11 17:52 | 6.2K | |
| webserver-results.tail | 2020-12-11 17:52 | 1.0K | |
| weedMaf.pl | 2020-12-11 17:52 | 1.6K | |
| wig2hints.pl | 2020-12-11 17:52 | 5.3K | |
| wigchoose.pl | 2020-12-11 17:52 | 2.8K | |
| writeResultsPage.pl | 2020-12-11 17:52 | 14K | |
| yaml2gff.1.4.pl | 2020-12-11 17:52 | 9.8K | |