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| Name | Last modified | Size | Description |
|---|---|---|---|---|
| Parent Directory | - | ||
| Makefile | 02-Mar-2011 22:57 | 68 | |
| README.autoAug | 02-Mar-2011 22:57 | 12K | |
| SplicedAlignment.pm | 02-Mar-2011 22:57 | 12K | |
| aln2wig | 02-Mar-2011 22:57 | 31K | |
| augustus2browser.pl | 05-Mar-2013 10:25 | 3.0K | |
| augustus2gbrowse.pl | 05-Mar-2013 10:25 | 389 | |
| autoAug.pl | 05-Mar-2013 10:25 | 48K | |
| autoAugPred.pl | 05-Mar-2013 10:25 | 20K | |
| autoAugTrain.pl | 05-Mar-2013 10:25 | 43K | |
| autoRun.pathInfo | 02-Mar-2011 22:57 | 195 | |
| bedgraph2wig.pl | 05-Mar-2013 10:25 | 3.3K | |
| blat2gbrowse.pl | 05-Mar-2013 10:25 | 4.3K | |
| blat2hints.pl | 05-Mar-2013 10:25 | 30K | |
| block2prfl.pl | 05-Mar-2013 10:25 | 11K | |
| cegma2gff.pl | 05-Mar-2013 10:25 | 1.8K | |
| checkParamArchive.pl | 05-Mar-2013 10:25 | 2.4K | |
| checkUTR | 02-Mar-2011 22:57 | 1.1K | |
| cleanDOSfasta.pl | 05-Mar-2013 10:25 | 535 | |
| clusterAndSplitGenes.pl | 05-Mar-2013 10:25 | 7.4K | |
| createAugustusJoblist.pl | 05-Mar-2013 10:25 | 4.8K | |
| del_from_prfl.pl | 05-Mar-2013 10:25 | 3.2K | |
| exonerate2hints.pl | 05-Mar-2013 10:25 | 3.0K | |
| exoniphyDb2hints.pl | 05-Mar-2013 10:25 | 1.3K | |
| extractTranscriptEnds.pl | 05-Mar-2013 10:25 | 507 | |
| filter-ppx.pl | 05-Mar-2013 10:25 | 435 | |
| filterGenes.pl | 05-Mar-2013 10:25 | 850 | |
| filterGenesIn_mRNAname.pl | 05-Mar-2013 10:25 | 1.7K | |
| filterGenesOut_mRNAname.pl | 05-Mar-2013 10:25 | 1.7K | |
| filterInFrameStopCodons.pl | 05-Mar-2013 10:25 | 1.1K | |
| filterPSL.pl | 05-Mar-2013 10:25 | 17K | |
| filterShrimp.pl | 05-Mar-2013 10:25 | 4.4K | |
| filterSpliceHints.pl | 05-Mar-2013 10:25 | 2.0K | |
| gbSmallDNA2gff.pl | 05-Mar-2013 10:25 | 3.0K | |
| gbrowse.conf | 02-Mar-2011 22:57 | 7.9K | |
| gbrowseold2gff3.pl | 05-Mar-2013 10:25 | 3.7K | |
| getAnnoFasta.pl | 05-Mar-2013 10:25 | 6.5K | |
| gff2gbSmallDNA.pl | 05-Mar-2013 10:25 | 16K | |
| gff2ps_mycustom | 02-Mar-2011 22:57 | 1.7K | |
| gffGetmRNA.pl | 05-Mar-2013 10:25 | 4.0K | |
| gtf2gff.pl | 05-Mar-2013 10:25 | 12K | |
| helpMod.pm | 02-Mar-2011 22:57 | 8.0K | |
| intron2exex.pl | 05-Mar-2013 10:25 | 4.4K | |
| joinPeptides.pl | 05-Mar-2013 10:25 | 1.4K | |
| join_aug_pred.pl | 05-Mar-2013 10:25 | 8.5K | |
| join_mult_hints.pl | 05-Mar-2013 10:25 | 1.2K | |
| maf2conswig.pl | 05-Mar-2013 10:25 | 3.4K | |
| makeMatchLists.pl | 05-Mar-2013 10:25 | 468 | |
| makeUtrTrainingSet.pl | 05-Mar-2013 10:25 | 16K | |
| maskNregions.pl | 05-Mar-2013 10:25 | 1.6K | |
| msa2prfl.pl | 05-Mar-2013 10:25 | 20K | |
| new_species.pl | 05-Mar-2013 10:25 | 4.3K | |
| opt_init_and_term_probs.pl | 05-Mar-2013 10:25 | 6.9K | |
| optimize_augustus.pl | 05-Mar-2013 10:25 | 47K | |
| parseSim4Output.pl | 05-Mar-2013 10:25 | 3.5K | |
| pasapolyA2hints.pl | 05-Mar-2013 10:25 | 2.1K | |
| peptides2alternatives.pl | 05-Mar-2013 10:25 | 3.3K | |
| peptides2hints.pl | 05-Mar-2013 10:25 | 6.6K | |
| phastconsDB2hints.pl | 05-Mar-2013 10:25 | 2.7K | |
| polyA2hints.pl | 05-Mar-2013 10:25 | 2.3K | |
| prints2prfl.pl | 05-Mar-2013 10:25 | 10K | |
| pslMap.pl | 05-Mar-2013 10:25 | 7.8K | |
| randomSplit.pl | 05-Mar-2013 10:25 | 1.6K | |
| ratewig.pl | 05-Mar-2013 10:25 | 584 | |
| retroDB2hints.pl | 05-Mar-2013 10:25 | 1.9K | |
| rmRedundantHints.pl | 05-Mar-2013 10:25 | 1.4K | |
| runAllSim4.pl | 05-Mar-2013 10:25 | 723 | |
| samMap.pl | 05-Mar-2013 10:25 | 4.9K | |
| scipiogff2gff.pl | 05-Mar-2013 10:25 | 1.1K | |
| selectLongestORFs.pl | 05-Mar-2013 10:25 | 531 | |
| simpleFastaHeaders.pl | 05-Mar-2013 10:25 | 1.2K | |
| simplifyFastaHeaders.pl | 05-Mar-2013 10:25 | 2.5K | |
| splitMfasta.pl | 05-Mar-2013 10:25 | 1.7K | |
| split_wiggle.pl | 05-Mar-2013 10:25 | 861 | |
| summarizeACGTcontent.pl | 05-Mar-2013 10:25 | 2.1K | |
| transMap2hints.pl | 05-Mar-2013 10:25 | 18K | |
| uniquePeptides.pl | 05-Mar-2013 10:25 | 1.9K | |
| utrgff2gbrowse.pl | 05-Mar-2013 10:25 | 2.3K | |
| wig2hints.pl | 05-Mar-2013 10:25 | 5.2K | |
| wigchoose.pl | 05-Mar-2013 10:25 | 2.8K | |
| writeResultsPage.pl | 05-Mar-2013 10:25 | 15K | |
| yaml2gff.1.4.pl | 05-Mar-2013 10:25 | 9.5K | |