Local command line

Discussions about WebAUGUSTUS, the Web Service of AUGUSTUS.

Moderator: bioinf

ptranvan
Posts: 1
Joined: Fri Jun 23, 2017 10:36 am

Local command line

Postby ptranvan » Fri Jun 23, 2017 11:13 am

Hello,

I would like to use Augsutus after MAKER's output.

What I got is a genome file and a protein file.

Is it possible to train my data without using the web service ? If yes what would be the command line ?

Thanks for your help.

User avatar
katharina
Site Admin
Posts: 514
Joined: Wed Nov 18, 2015 6:14 pm
Location: Greifswald
Contact:

Re: Local command line

Postby katharina » Tue Jul 25, 2017 8:55 am

The tool behind WebAUGUSTUS is autoAug.pl.

You find it - including the command line if you call it with --help parameter, at http://bioinf.uni-greifswald.de/augustu ... ent.tar.gz in the scripts folder.

Required software - besides AUGUSTUS - are PASA and Scipio. Please read the installation instructions for AutoAug.pl http://bioinf.uni-greifswald.de/augustu ... ME.autoAug .
Katharina


Return to “WebAUGUSTUS”

Who is online

Users browsing this forum: No registered users and 1 guest