Hi,
I attempt to obtain training gene sets for my new species using autoAug.pl on RNAseq data.
I am sure I installed prerequisite softwares of PASA (http://pasapipeline.github.io/#A_sii) and I installed latest version of PASA.
This is a command I ran:
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autoAug.pl --genome=genome.fasta --species=mySpecies --cdna=RNAseq.fasta --verbose=2 --pasa
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…failed to execute:perl pasa_asmbls_to_training_set.dbi -M "my_pasadb:localhost" -p "readonly:readonly" -g ./autoAug/seq/genome_clean.fa
Your help would be much appreciated.
Jung