autoAug.pl error when using with PASA

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katharina
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autoAug.pl error when using with PASA

Post by katharina »

Originally posted in the old forum by Jung on 12.10.2015 - 05:12
Hi,
I attempt to obtain training gene sets for my new species using autoAug.pl on RNAseq data.
I am sure I installed prerequisite softwares of PASA (http://pasapipeline.github.io/#A_sii) and I installed latest version of PASA.
This is a command I ran:

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autoAug.pl --genome=genome.fasta --species=mySpecies --cdna=RNAseq.fasta --verbose=2 --pasa
Then I got this message:

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…failed to execute:perl pasa_asmbls_to_training_set.dbi -M "my_pasadb:localhost" -p "readonly:readonly" -g ./autoAug/seq/genome_clean.fa
This problem is resulted from use of unexpected version of PASA?
Your help would be much appreciated.
Jung
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katharina
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Re: autoAug.pl error when using with PASA

Post by katharina »

by Katharina on 19.10.2015 - 10:55
We use the PASA version from January 9th 2011 for autoAug.pl.
Katharina
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