bam2hints created an empty gff file

Discussions about predicting genes with AUGUSTUS. Not covered here: WebAUGUSTUS and BRAKER1

Moderator: bioinf

Posts: 1
Joined: Mon May 08, 2017 4:25 am

bam2hints created an empty gff file

Postby Jung » Mon May 08, 2017 4:35 am

Dear all,
I am trying ab-initio gene prediction on my species.

According to this page ( ... seq.Tophat), I attempted to get intron hints from several sets of RNAseq data, but at step 11, bam2hints created an empty .gff file.

I think it's not error because there was no on terminal and it just said like:

Wait a moment, calculating maximum block size that needs to be allocated... .. done

I suspected I happened to make some mistakes at previous steps, but I could not figure out.
Please Help.

Return to “Predicting Genes with AUGUSTUS”

Who is online

Users browsing this forum: No registered users and 1 guest