wrongly predicted protein fusions
Posted: Thu Nov 19, 2015 7:56 pm
Originally posted in the old forum by Chris on 18.07.2013 - 17:29
Dear forum members,
I am currently using Augutus version 2.5.5. I trained the algorithm with a transcriptome data. Unfortunately, Augutus creates protein predictions which
are obviously fusions of serveral genes. Does anybody of you know such a
thing can be circumvented? Or is there a parameter available which limits the
maximum length of a protein prediction in terms of amino acids or base pairs?
I am very grateful for any help,
Chris
Dear forum members,
I am currently using Augutus version 2.5.5. I trained the algorithm with a transcriptome data. Unfortunately, Augutus creates protein predictions which
are obviously fusions of serveral genes. Does anybody of you know such a
thing can be circumvented? Or is there a parameter available which limits the
maximum length of a protein prediction in terms of amino acids or base pairs?
I am very grateful for any help,
Chris