Braker using long evolutionary distant protein hints

Discussions about BRAKER, the automated joint usage of GeneMark and AUGUSTUS.

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aliceurzi
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Joined: Wed Apr 18, 2018 2:58 pm

Braker using long evolutionary distant protein hints

Post by aliceurzi » Wed Apr 18, 2018 3:32 pm

Hi Katharina,

I am going to run Braker2 using long evolutionary distant protein hints only.

I generated protein alignments with Prosplign which gave me results in .asn file format,then I converted the .asn to gff file but how can I get final protein hints file to use in Braker providing multiplicity information?
I cannot find any provided script to generate hints from long evolutionary distant protein alignments.

Thank you in advance for your help,

Alice

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katharina
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Re: Braker using long evolutionary distant protein hints

Post by katharina » Tue May 08, 2018 1:14 pm

Please contact Alexandre Lomsadze (or me) via e-mail.
Katharina

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