CPG Training in CAT

Discussing gene prediction tools that are not developed by the Greifswald bioinformatics group.

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CPG Training in CAT

Post by fbemm » Thu Jun 29, 2017 3:19 pm

CAT is currently calling the Augustus CPG training like this:

cmd = ['augustus',

Looking at the --paramlist at least refSpecies, referenceFile and referenceFile are not allowed in Augustus 3.2.3 (compiled COMPGENEPRED = true).

Any idea why I don't see these parameter?

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Re: CPG Training in CAT

Post by Mario » Tue Jul 25, 2017 10:06 am

Yes, this older release did not work with Ian Fiddes' Comparative Annotation Pipeline yet.
Please check out the current one: augustus3.3


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