CPG Training in CAT

Discussing gene prediction tools that are not developed by the Greifswald bioinformatics group.

Moderator: bioinf

Posts: 1
Joined: Thu Jun 29, 2017 3:17 pm

CPG Training in CAT

Postby fbemm » Thu Jun 29, 2017 3:19 pm

CAT is currently calling the Augustus CPG training like this:

cmd = ['augustus',

Looking at the --paramlist at least refSpecies, referenceFile and referenceFile are not allowed in Augustus 3.2.3 (compiled COMPGENEPRED = true).

Any idea why I don't see these parameter?

Site Admin
Posts: 1
Joined: Wed Nov 18, 2015 7:03 pm

Re: CPG Training in CAT

Postby Mario » Tue Jul 25, 2017 10:06 am

Yes, this older release did not work with Ian Fiddes' Comparative Annotation Pipeline yet.
Please check out the current one: augustus3.3


Return to “Other Gene Prediction Tools”

Who is online

Users browsing this forum: No registered users and 1 guest