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jon@Jons-MacBook-Pro:/usr/local/opt/augustus/libexec/examples$ augustus --proteinprofile=profile/PF00995.16.prfl --species=generic example.fa
# This output was generated with AUGUSTUS (version 3.2.1).
# AUGUSTUS is a gene prediction tool written by M. Stanke (firstname.lastname@example.org),
# O. Keller, S. König, L. Gerischer and L. Romoth.
# Please cite: Mario Stanke, Mark Diekhans, Robert Baertsch, David Haussler (2008),
# Using native and syntenically mapped cDNA alignments to improve de novo gene finding
# Bioinformatics 24: 637-644, doi 10.1093/bioinformatics/btn013
# No extrinsic information on sequences given.
# Initialising the parameters using config directory /usr/local/opt/augustus/libexec/config/ ...
PP::Profile: Error parsing pattern file"profile/PF00995.16.prfl", line 9.
Here's I'm using a profile shipped with Augustus, so it seems like the part of the code that parses the prfl file is not running correctly. Any ideas on why this is happening or how to fix?