Verticillium longisporum genome & annotation data

Data on this website is associated with the manuscript A 20 kb Lineage-Specific genomci region tames virulence in pathenogenic amphidiploid Verticillium longisporum by Harting et al. that has been submitted to Molecular Plant Pathology in February 2021. The data will remain in this location for a minimum of 10 years after publication of the manuscript.

Genome and annotation have been submitted to NCBI Genomes. During the submission process, a number of transcripts was critized by NCBI filters and staff. The critized transcripts encompass e.g. transcripts that are nested in other transcripts. We also removed all incomplete transcript predictions. Analysis in above mentioned manuscript is based on the original annotation, and thus we are hosting it here in addition to the NCBI submission.

Verticillium longisporum VL43

vl43-genome.fa.gz
vl43-au17-readme
vl43-au17.gff.gz
vl43-au17.codingseq.gz
vl43-au17.cdsexons.gz
vl43-au17.aa.gz
vl43-au17.gtf.gz
vl43.sqn.gz - the file that was accepted by NCBI for genome submission

Verticillium longisporum VL32

vl32-genome.fa.gz
vl32-au4-readme
vl32-au4.gff.gz
vl32-au4.codingseq.gz
vl32-au4.cdsexons.gz
vl32-au4.aa.gz
vl32-au4.gtf.gz
vl32.sqn.gz - the file that was accepted by NCBI for genome submission

Verticillium longisporum VL145C

vl145C-genome.fa.gz
vl145C-au2-readme
vl145C-au2.gff.gz
vl145C-au2.codingseq.gz
vl145C-au2.cdsexons.gz
vl145C-au2.aa.gz
vl145C-au2.gtf.gz
vl145c.sqn.gz - the file that was accepted by NCBI for genome submission

Please direct your questions about these gene sets to katharina.hoff@uni-greifswald.de