Databases available for ViroBLAST search


Nucleotide sequence databases

Viroverse
Local HIV-1 sequence database in Mullins lab.

Viral genbank
Viral sequence subset of NCBI genbank. The database is updated weekly.

HIV genbank
HIV sequence subset of NCBI genbank. The database is updated weekly.

Human genome (mmddyy)
Human genomic sequences from NCBI. The date in parentheses is the publish date.

Pan troglodytes genome (mmddyy)
Pan troglodytes genomic sequences from NCBI. The date in parentheses is the publish date.

LANL HIV-1 complete genome (yyyy)
HIV-1 complete genome sequences from LANL. The year in parentheses is the publish year.

LANL HIV-1 subtype reference (yyyy)
HIV-1 subtype reference sequences from LANL. The year in parentheses is the publish year.

LANL HIV-1 consensus & ancestor (yyyy)
HIV-1 consensus and ancestral sequences from LANL. The year in parentheses is the publish year.

Vectors
Non-redundant vector database (UniVec) of NCBI.

RefSeq
RefSeq nucleotide sequences from NCBI's Reference Sequence Project.

Protein sequence databases

nr
All non-redundant GenBank CDS translations + RefSeq Proteins + PDB + SwissProt + PIR + PRF.

Viral protein
Viral protein sequence subset of NCBI genbank. The database is updated weekly.

HIV protein
HIV protein sequence subset of NCBI genbank. The database is updated weekly.

Human protein (mmddyy)
Human protein sequences from NCBI. The date in parentheses is the publish date.

Pan troglodytes protein (mmddyy)
Pan troglodytes protein sequences from NCBI. The date in parentheses is the publish date.

RefSeq
RefSeq protein sequences from NCBI's Reference Sequence Project.

SwissProt
Last major release of the SWISS-PROT protein sequence database (no updates).