AUGUSTUS Forum

Update: I changed the lines of code in autoAugTrain.pl responsible of searching the genes with both UTR and writing them into bothutr.lst, and it seems to do the work. open(TR, "tr.lst") or die ("Can not open tr.lst!\n"); open(BOTH, "> bothutr.lst"); my $g; while(<TR>){...

Hi, I have used webAugustus for a while for annotating fungal genomes paired with Maker and usually I get no UTR prediction even when using RNA-seq data. I have started to recreate the workflow (based on the logs) on our cluster for convenience, and I found that after running the 6th and last step (...