Search found 5 matches

by mehlan
Thu Nov 18, 2021 2:42 pm
Forum: WebAUGUSTUS
Topic: URL error - FASTA format
Replies: 4
Views: 6732

Re: URL error - FASTA format

Please note the restrictions for the DNA fasta file format: https://bioinf.uni-greifswald.de/webaugustus/predictiontutorial#genome_file Reasons why the error message "The provided genome file "input.fasta" is not in DNA Fasta format" is displayed: the first line is not a header l...
by mehlan
Wed Aug 11, 2021 3:31 pm
Forum: AUGUSTUS Compilation/Installation
Topic: Error during installation
Replies: 1
Views: 637

Re: Error during installation

Please read docs/INSTALL.md in case of installation problems
or try:
sudo apt-get install libmysql++-dev
by mehlan
Thu Mar 25, 2021 8:26 am
Forum: Training AUGUSTUS
Topic: Species File Failing in MAKER
Replies: 1
Views: 1249

Re: Species File Failing in MAKER

The line
Invalid nucleotide '�' encountered.
may show that not all input files are in ASCII format.
Please check this for all input files.
For example for the files in the species folder use:

Code: Select all

$ find species -type f -print0 | xargs -0 file 
by mehlan
Thu May 28, 2020 2:16 pm
Forum: WebAUGUSTUS
Topic: Trouble with prediction submission
Replies: 1
Views: 1178

Re: Trouble with prediction submission

WebAUGUSTUS retrieves large files from a public web link. This web link points directly to the file, e.g. https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/013/425/GCF_000013425.1_ASM1342v1/GCF_000013425.1_ASM1342v1_genomic.fna.gz or http://bioinf.uni-greifswald.de/webaugustus/examples/LG16.fa When p...
by mehlan
Mon Oct 14, 2019 2:26 pm
Forum: Training AUGUSTUS
Topic: Training Histomonas failed
Replies: 1
Views: 1469

Re: Training Histomonas failed

Sorry, we had a misconfiguration in our augustus training pipeline, which is now fixed.
Sorry for any inconvenience