Search found 3 matches

by ddrddr
Sat Apr 20, 2019 1:03 am
Forum: Predicting Genes with AUGUSTUS
Topic: meaning of attribues in GFF output
Replies: 0
Views: 2185

meaning of attribues in GFF output

Would someone point me to documentation about the the meaning of the attributes string (column 9) of the GFF gene prediction output?

e.g., grp=R0055;pri=4;src=E "2.73287e+07;1;61:0"

I especially don't understand "1;61:0".
by ddrddr
Thu Feb 04, 2016 8:41 pm
Forum: WebAUGUSTUS
Topic: quwstion about outfile
Replies: 4
Views: 3919

Re: quwstion about outfile

ddrddr wrote:Would you tell me how the .gtf file is made? I see a gtf2gff.pl script but not the other way.
I don't know if this is the only way it is done, but it looks like the .gtf file is simply the .gff lines that match /\tAUGUSTUS\t/. At least, that is how autoAugPred.pl does it.
by ddrddr
Thu Feb 04, 2016 8:18 pm
Forum: WebAUGUSTUS
Topic: quwstion about outfile
Replies: 4
Views: 3919

Re: quwstion about outfile

Would you tell me how the .gtf file is made? I see a gtf2gff.pl script but not the other way.