Search found 3 matches

by jonpalmer
Fri Jul 01, 2016 2:22 pm
Forum: Training AUGUSTUS
Topic: optimize_augustus.pl results in lower prediction accuracy??
Replies: 1
Views: 2233

optimize_augustus.pl results in lower prediction accuracy??

Hello, I'm getting some strange results from optimize_augustus.pl, essentially it is not resulting in improving the training parameters. I'm using ~ 1200 high quality models that I split into a test set (200) and training set, run etraining, run an initial prediction with augustus which yields gene ...
by jonpalmer
Tue May 03, 2016 3:24 pm
Forum: AUGUSTUS Compilation/Installation
Topic: augustus PPX error (Mac Homebrew install)
Replies: 2
Views: 5534

Re: augustus PPX error (Mac Homebrew install)

I have also tried to compile on CentOS 7 the newest version of Augustus 3.2.2. However, now I'm getting a segmentation fault when trying to run PPX. Please help. Here is what I did for compilation. #compile filterBam, adding BAMTOOLS variable with path to bamtools [augustus-3.2.2]$ make -C auxprogs/...
by jonpalmer
Mon Apr 25, 2016 4:25 pm
Forum: AUGUSTUS Compilation/Installation
Topic: augustus PPX error (Mac Homebrew install)
Replies: 2
Views: 5534

augustus PPX error (Mac Homebrew install)

I'm getting an error when trying to use a protein profile in Augustus. I've tried several different versions, Augustus 3.2.1, 3.2.2 and get the same error in all of the distributions. The error does not exist when I run on Linux, so seems like it must be some sort of compilation error. I've installe...