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Error while Running EVM with AUGUSTUS output

Last post by mehlan « Mon Mar 27, 2023 11:09 am
Posted in Predicting Genes with AUGUSTUS

by mehlan » Mon Mar 27, 2023 11:09 am » in Predicting Genes with AUGUSTUS

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22829 Views

Last post by mehlan
Mon Mar 27, 2023 11:09 am
ab initio prediction of non-canonical splice sites

Last post by swarbred « Thu Sep 02, 2021 1:14 pm
Posted in Predicting Genes with AUGUSTUS

by swarbred » Thu Sep 02, 2021 1:14 pm » in Predicting Genes with AUGUSTUS

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32917 Views

Last post by swarbred
Thu Sep 02, 2021 1:14 pm
Augustus stuck during busco run

Last post by bauerlev « Sat Jan 30, 2021 12:23 am
Posted in Predicting Genes with AUGUSTUS

by bauerlev » Sat Jan 30, 2021 12:23 am » in Predicting Genes with AUGUSTUS

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30971 Views

Last post by bauerlev
Sat Jan 30, 2021 12:23 am
Can anyone tell me what is the meaning of m1-g #### genes?

Last post by kjestradag « Mon Nov 02, 2020 8:31 pm
Posted in BRAKER

by kjestradag » Mon Nov 02, 2020 8:31 pm » in BRAKER

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60549 Views

Last post by kjestradag
Mon Nov 02, 2020 8:31 pm
Running Augustus training with several CPUs through BUSCO

Last post by Rémi « Wed Oct 21, 2020 12:52 pm
Posted in Training AUGUSTUS

by Rémi » Wed Oct 21, 2020 12:52 pm » in Training AUGUSTUS

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32930 Views

Last post by Rémi
Wed Oct 21, 2020 12:52 pm
Number of training genes too low

Last post by AMorales « Wed Sep 16, 2020 11:21 am
Posted in Training AUGUSTUS

by AMorales » Wed Sep 16, 2020 11:21 am » in Training AUGUSTUS

0 Replies

33557 Views

Last post by AMorales
Wed Sep 16, 2020 11:21 am
alternate codons

Last post by cpaight « Fri Aug 21, 2020 7:59 pm
Posted in WebAUGUSTUS

by cpaight » Fri Aug 21, 2020 7:59 pm » in WebAUGUSTUS

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34974 Views

Last post by cpaight
Fri Aug 21, 2020 7:59 pm
Genome versions used for training datasets

Last post by Osedax « Fri May 08, 2020 9:34 pm
Posted in Training AUGUSTUS

by Osedax » Fri May 08, 2020 9:34 pm » in Training AUGUSTUS

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30842 Views

Last post by Osedax
Fri May 08, 2020 9:34 pm
Augustus installation error on MacOS

Last post by Tajammul Hussain « Mon Apr 27, 2020 7:53 pm
Posted in AUGUSTUS Compilation/Installation

by Tajammul Hussain » Mon Apr 27, 2020 7:53 pm » in AUGUSTUS Compilation/Installation

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57681 Views

Last post by Tajammul Hussain
Mon Apr 27, 2020 7:53 pm
Optimized augusutus for Cucumis melo

Last post by elad.oren « Sun Dec 15, 2019 3:02 pm
Posted in Training AUGUSTUS

by elad.oren » Sun Dec 15, 2019 3:02 pm » in Training AUGUSTUS

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33822 Views

Last post by elad.oren
Sun Dec 15, 2019 3:02 pm
transfer reference gene names to predicted sequences

Last post by anhanijr « Wed Oct 02, 2019 4:06 pm
Posted in Predicting Genes with AUGUSTUS

by anhanijr » Wed Oct 02, 2019 4:06 pm » in Predicting Genes with AUGUSTUS

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34049 Views

Last post by anhanijr
Wed Oct 02, 2019 4:06 pm
training gene set and joingenes?

Last post by Kang « Thu Jun 27, 2019 1:06 pm
Posted in Training AUGUSTUS

by Kang » Thu Jun 27, 2019 1:06 pm » in Training AUGUSTUS

0 Replies

36611 Views

Last post by Kang
Thu Jun 27, 2019 1:06 pm
stranded RNAseq and BRAKER

Last post by ssully « Tue May 14, 2019 10:25 pm
Posted in BRAKER

by ssully » Tue May 14, 2019 10:25 pm » in BRAKER

0 Replies

58823 Views

Last post by ssully
Tue May 14, 2019 10:25 pm
Recompiling Augustus for short introns

Last post by kbseah « Wed May 08, 2019 5:48 pm
Posted in Predicting Genes with AUGUSTUS

by kbseah » Wed May 08, 2019 5:48 pm » in Predicting Genes with AUGUSTUS

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39802 Views

Last post by kbseah
Wed May 08, 2019 5:48 pm
meaning of attribues in GFF output

Last post by ddrddr « Sat Apr 20, 2019 1:03 am
Posted in Predicting Genes with AUGUSTUS

by ddrddr » Sat Apr 20, 2019 1:03 am » in Predicting Genes with AUGUSTUS

0 Replies

39632 Views

Last post by ddrddr
Sat Apr 20, 2019 1:03 am
executing augustus

Last post by samou1992 « Thu Apr 11, 2019 4:30 am
Posted in Predicting Genes with AUGUSTUS

by samou1992 » Thu Apr 11, 2019 4:30 am » in Predicting Genes with AUGUSTUS

0 Replies

41662 Views

Last post by samou1992
Thu Apr 11, 2019 4:30 am
Imprint/Data Privacy Protection

Last post by katharina « Mon Jun 11, 2018 10:19 am
Posted in Welcome to AUGUSTUS Forum!

by katharina » Mon Jun 11, 2018 10:19 am » in Welcome to AUGUSTUS Forum!

0 Replies

105106 Views

Last post by katharina
Mon Jun 11, 2018 10:19 am
Reducing average length of gene structure predictions

Last post by katharina « Fri Nov 20, 2015 12:20 pm
Posted in Predicting Genes with AUGUSTUS

by katharina » Fri Nov 20, 2015 12:20 pm » in Predicting Genes with AUGUSTUS

0 Replies

45877 Views

Last post by katharina
Fri Nov 20, 2015 12:20 pm
genemodel=complete option

Last post by katharina « Thu Nov 19, 2015 3:22 pm
Posted in Predicting Genes with AUGUSTUS

by katharina » Thu Nov 19, 2015 3:22 pm » in Predicting Genes with AUGUSTUS

0 Replies

39443 Views

Last post by katharina
Thu Nov 19, 2015 3:22 pm
fastBlockSearch profile read error

Last post by katharina « Thu Nov 19, 2015 3:18 pm
Posted in Predicting Genes with AUGUSTUS

by katharina » Thu Nov 19, 2015 3:18 pm » in Predicting Genes with AUGUSTUS

0 Replies

41897 Views

Last post by katharina
Thu Nov 19, 2015 3:18 pm
Nettiquette

Last post by katharina « Wed Nov 18, 2015 6:31 pm
Posted in Welcome to AUGUSTUS Forum!

by katharina » Wed Nov 18, 2015 6:31 pm » in Welcome to AUGUSTUS Forum!

0 Replies

98086 Views

Last post by katharina
Wed Nov 18, 2015 6:31 pm

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