how to use webAUGUSTUS-derived parameters in local version

Discussions about WebAUGUSTUS, the Web Service of AUGUSTUS.

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s.costagli3
Posts: 2
Joined: Sun Dec 12, 2021 5:19 pm

how to use webAUGUSTUS-derived parameters in local version

Post by s.costagli3 »

I ran the training for my species of interest on webAUGUSTUS, now I would like to know how I can use the results of this training in AUGUSTUS local version. Thanks, kind regards.
mehlan
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Posts: 6
Joined: Mon Oct 14, 2019 2:24 pm

Re: how to use webAUGUSTUS-derived parameters in local version

Post by mehlan »

  • download the "Species parameter archive" (parameters.tar.gz) from the webAUGUSTUS training page
  • unpack parameters.tar.gz and place the contained folder into the
  • local Augustus "Species" folder (probably in config/species)
  • use the folder name as argument for the augustus --species parameter
Please see http://bioinf.uni-greifswald.de/webaugu ... parameters
s.costagli3
Posts: 2
Joined: Sun Dec 12, 2021 5:19 pm

Re: how to use webAUGUSTUS-derived parameters in local version

Post by s.costagli3 »

thank you very much for your reply!
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