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how to use webAUGUSTUS-derived parameters in local version
Posted: Sun Dec 12, 2021 5:29 pm
by s.costagli3
I ran the training for my species of interest on webAUGUSTUS, now I would like to know how I can use the results of this training in AUGUSTUS local version. Thanks, kind regards.
Re: how to use webAUGUSTUS-derived parameters in local version
Posted: Mon Dec 13, 2021 2:20 pm
by mehlan
- download the "Species parameter archive" (parameters.tar.gz) from the webAUGUSTUS training page
- unpack parameters.tar.gz and place the contained folder into the
- local Augustus "Species" folder (probably in config/species)
- use the folder name as argument for the augustus --species parameter
Please see
http://bioinf.uni-greifswald.de/webaugu ... parameters
Re: how to use webAUGUSTUS-derived parameters in local version
Posted: Mon Dec 13, 2021 3:30 pm
by s.costagli3
thank you very much for your reply!