Could not get same result with example data
Posted: Thu Jun 21, 2018 6:58 am
Hi,
I tried to use AUGUSTUS(3.3) with example data on the following webpage.
http://bioinf.uni-greifswald.de/augustu ... index.html
When I tried "Exercise2 step3. MAKE AN INITIAL TRAINING", I could not get the same result as showing on the webpage.
"$augustus --species=bug genes.gb.test | tee firsttest.out"
The result should be like this
----------------------------------------------------------------------------\
transcript | #pred | #anno | TP | FP | FN | sensitivity | specificity |
----------------------------------------------------------------------------|
gene level | 118 | 100 | 53 | 65 | 47 | 0.53 | 0.449 |
----------------------------------------------------------------------------/
But I got a result like this
----------------------------------------------------------------------------\
transcript | #pred | #anno | TP | FP | FN | sensitivity | specificity |
----------------------------------------------------------------------------|
gene level | 99 | 100 | 0 | 99 | 100 | 0 | 0 |
----------------------------------------------------------------------------/
I also try with my data but I got a similar result (no sensitivity and specificity)
I want to know what is wrong with my commanding or dataset.
Thank you much
I tried to use AUGUSTUS(3.3) with example data on the following webpage.
http://bioinf.uni-greifswald.de/augustu ... index.html
When I tried "Exercise2 step3. MAKE AN INITIAL TRAINING", I could not get the same result as showing on the webpage.
"$augustus --species=bug genes.gb.test | tee firsttest.out"
The result should be like this
----------------------------------------------------------------------------\
transcript | #pred | #anno | TP | FP | FN | sensitivity | specificity |
----------------------------------------------------------------------------|
gene level | 118 | 100 | 53 | 65 | 47 | 0.53 | 0.449 |
----------------------------------------------------------------------------/
But I got a result like this
----------------------------------------------------------------------------\
transcript | #pred | #anno | TP | FP | FN | sensitivity | specificity |
----------------------------------------------------------------------------|
gene level | 99 | 100 | 0 | 99 | 100 | 0 | 0 |
----------------------------------------------------------------------------/
I also try with my data but I got a similar result (no sensitivity and specificity)
I want to know what is wrong with my commanding or dataset.
Thank you much