training gene set and joingenes?
When I check braker, I found that it is trying to keep genes with less introns to be training set for AUGUSTUS, is it better to use such gene for training?
Also I found something regarding with joingenes. One thing popped out from my mind is that some times in AUGUSTUS output, I find case where two neighbor predicted genes should actually be one really gene, in other word, AUGUSTUS sometimes break gene into two or more pieces. I was wondering if the "joingene" is a trying to fix that? If not, is there anything solution for this kind of case? Thank you very much.