running autoAug.pl on several CPUs

Discussions about training AUGUSTUS from various sources of evidence. Not discussed here: BRAKER1 and WebAUGUSTUS!

Moderator: bioinf

Post Reply
User avatar
katharina
Site Admin
Posts: 531
Joined: Wed Nov 18, 2015 6:14 pm
Location: Greifswald
Contact:

running autoAug.pl on several CPUs

Post by katharina »

Originally posted in the old forum by Marie on 04.11.2014 - 17:20
Hello !
I was wondering if it is possible to run autoAug.pl using several CPUs ?
Thanks !
User avatar
katharina
Site Admin
Posts: 531
Joined: Wed Nov 18, 2015 6:14 pm
Location: Greifswald
Contact:

Re: running autoAug.pl on several CPUs

Post by katharina »

by katharina on 19.11.2014 - 17:37
It is possible to run autoAug.pl with a Sun Grid Engine, which distributes parts of autoAug.pl to several single CPU slots.
optimize_augustus.pl, which is called by autoAug.pl can be run on several CPUs, but you'd need to call it outside of autoAug.pl, or alter the call in the autoAug.pl script.
Katharina
Post Reply