any crude diagnostic for optimize_augustus.pl run progress?

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katharina
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any crude diagnostic for optimize_augustus.pl run progress?

Post by katharina »

Originally posted in the old forum by Anand KS Rao on 10.08.2014 - 22:18
Hi Mario and Katharina,
I am re-running my optimize_augustus.pl (for UTR training) step with your Perl script, with 3 cycles.
I am not sure whether the STDOUT from your Perl script indicates which cycle # the Perl script is going through.
So using STDOUT on my screen, what is/are line(s) that I can use as a crude diagnostic for whether the script has progressed beyond cycle #1 or if it is close to finish.
Could you please help?
Thank you!
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katharina
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Re: any crude diagnostic for optimize_augustus.pl run progress?

Post by katharina »

by katharina on 13.08.2014 - 11:31
Best redirect STDOUT to a file, and then you'll see a repetitive pattern, parameters reoccur in certain intervals.
Katharina
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