How to include cdna file
Posted: Fri Nov 20, 2015 12:57 pm
Originally posted in the old forum by Han on 26.02.2013 - 06:28
Hi,
I'm working on a primate genome, previously I run augustus for gene prediction and it's works well. Now I want to use augustus to do gene prediction and include the cdna file. I've download human cdna file form ensemble.
Is this correct?
and I got this message:
Hi,
I'm working on a primate genome, previously I run augustus for gene prediction and it's works well. Now I want to use augustus to do gene prediction and include the cdna file. I've download human cdna file form ensemble.
Is this correct?
Code: Select all
>augustus --protein=on --introns=on --start=on --stop=on --cds=on --codingseq=on --gff3=on --cdna=cdna.fasta --outfile=NL_try_result --species=human NL_try.fasta
Code: Select all
augustus: ERROR
unknown parameter: "cdna"