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augustus command for EVM
Posted: Fri Nov 20, 2015 1:07 pm
by katharina
Originally posted in the old forum by megha on 22.05.2014 - 11:43
What is the ideal input command for augustus which can be put as input for EVM.
Re: augustus command for EVM
Posted: Fri Nov 20, 2015 1:07 pm
by katharina
by katharina on 23.05.2014 - 15:56
I don't have much experience with EVM.
But what matters is that you have the best possible gene set produced by AUGUSTUS, i.e.
you should use parameters that suit well for your species
you should use hints from extrinsic evidence if available
generally: make sure that the predictions make sense before putting them in any kind of postprocessing/combiner pipeline, e.g. by looking at example genes in a Browser