Branch sites in introns (and other conserved regions) used for gene prediction
Posted: Fri Nov 20, 2015 1:08 pm
Originally posted in the old forum by EJ Blom on 25.03.2013 - 16:10
Dear developers,
I was wondering whether conserved regions such as branch sites are used in the de novo gene prediction.
I stumbled across this database:http://lemur.amu.edu.pl/share/ERISdb/weblogos_U2.html
and there seem to be some regions very conserved in introns, which could be used for gene prediction.
Best
EJ
Dear developers,
I was wondering whether conserved regions such as branch sites are used in the de novo gene prediction.
I stumbled across this database:http://lemur.amu.edu.pl/share/ERISdb/weblogos_U2.html
and there seem to be some regions very conserved in introns, which could be used for gene prediction.
Best
EJ