non-canonical splice site patterns
Posted: Fri Nov 20, 2015 1:25 pm
Originally posted in the old forum by Bram on 26.10.2012 - 12:56
I would like to adopt Augustus into my prediction pipeline but I need to inquire into one issue: Can Augustus handle non-canonical splice sites except (except for AT-AC)?
The species I work on have GT-TG, GC-CG,... and more. If I provide these things as intron hints, will Augustus accept it? Or will it force the gene structure into GT/GC-AG?
I would like to adopt Augustus into my prediction pipeline but I need to inquire into one issue: Can Augustus handle non-canonical splice sites except (except for AT-AC)?
The species I work on have GT-TG, GC-CG,... and more. If I provide these things as intron hints, will Augustus accept it? Or will it force the gene structure into GT/GC-AG?