AUGUSTUS PPX memory problem
Posted: Thu Nov 19, 2015 2:37 pm
Originally posted by Luke in the old forum on 05.12.2013 - 11:20
I'm wondering if you can help me out with a weird memory problem I've run into run running augustus. It's the ppx extension.
I'm looping over a batch of 1000 profiles, running a fastBlockSearch and then running augustus ppx on the best hit region ~15kb max. Strangely, I'm running out of memory! I've been raising the ceiling and am up to 44gb / cpu.
I've narrowed it down to a single nasty profile, so it appears to be an isolated case.
It's quite long, and low complexity in parts.
I'm wondering if you can help me out with a weird memory problem I've run into run running augustus. It's the ppx extension.
I'm looping over a batch of 1000 profiles, running a fastBlockSearch and then running augustus ppx on the best hit region ~15kb max. Strangely, I'm running out of memory! I've been raising the ceiling and am up to 44gb / cpu.
I've narrowed it down to a single nasty profile, so it appears to be an isolated case.
It's quite long, and low complexity in parts.