Hi!
I have a little problem in Augustus outputs.
Using command line:
Code: Select all
./bin/augustus --species=some_species ../transcripts.fa --extrinsicCfgFile=./config/extrinsic/extrinsic.some_species.cfg
--hintsfile=../hints.est.gff > augustus.hints.gff
The output that it generates sometimes, the preferred one : http://en.zimagez.com/zimage/augout1.php
And the another one:
http://en.zimagez.com/zimage/augout2.php
As you can see the same scaffold in the first output contains more predicted "genes", and the second contains only one huge "gene". I always use the same command line, only thing that changes is hints.est.gff file. I often generate new hints file because of getting new transcriptome data.
Maybe you can help me solve this problem?