FeatureCollection::esource: invalid source key: P
Posted: Thu Nov 19, 2015 7:53 pm
Originally posted in the old forum by Sam on 13.06.2014 - 18:58
Hi,
I got this error running augustus supplying EST hints and protein hints obtained from exonerate output.
Here's is how I got hints from exonerate:
If I don't specify "source=P", the default source it adds is "src=XNT" in the hints file.
In the extrinsic.cfg file, I added "P" to indicate protein hints.
I would appreciate your input on this. Thank you.
Hi,
I got this error running augustus supplying EST hints and protein hints obtained from exonerate output.
Code: Select all
FeatureCollection::esource: invalid source key: P
augustus: ERROR
FeatureCollection::esource: invalid source key: PCode: Select all
exonerate2hints.pl --priority=3 --source=P --in=F001_exonerate.out --out=F001_exonerate_hints.gffIn the extrinsic.cfg file, I added "P" to indicate protein hints.
I would appreciate your input on this. Thank you.