Braker using long evolutionary distant protein hints

Discussions about BRAKER, the automated joint usage of GeneMark and AUGUSTUS.

Moderator: bioinf

Post Reply
aliceurzi
Posts: 1
Joined: Wed Apr 18, 2018 2:58 pm

Braker using long evolutionary distant protein hints

Post by aliceurzi »

Hi Katharina,

I am going to run Braker2 using long evolutionary distant protein hints only.

I generated protein alignments with Prosplign which gave me results in .asn file format,then I converted the .asn to gff file but how can I get final protein hints file to use in Braker providing multiplicity information?
I cannot find any provided script to generate hints from long evolutionary distant protein alignments.

Thank you in advance for your help,

Alice
User avatar
katharina
Site Admin
Posts: 531
Joined: Wed Nov 18, 2015 6:14 pm
Location: Greifswald
Contact:

Re: Braker using long evolutionary distant protein hints

Post by katharina »

Please contact Alexandre Lomsadze (or me) via e-mail.
Post Reply