Braker
Posted: Thu Nov 19, 2015 3:32 pm
Originally posted in the old forum by Rens Holmer on 05.03.2015 - 08:19
I recently started experimenting with using the Braker pipeline to incorporate RNA-seq into gene prediction. One of the problems I encounter is that while running braker in a certain folder, the files *.average_gene_length.out, *.f.bad.gtf and *.f.good.gtf are placed in the parent directory and can therefore not be found by braker.
Any ideas on what is causing this problem?
Also, is there no github (or equivalent) for braker/augustus?
I recently started experimenting with using the Braker pipeline to incorporate RNA-seq into gene prediction. One of the problems I encounter is that while running braker in a certain folder, the files *.average_gene_length.out, *.f.bad.gtf and *.f.good.gtf are placed in the parent directory and can therefore not be found by braker.
Any ideas on what is causing this problem?
Also, is there no github (or equivalent) for braker/augustus?