Error during installation

Discussions about compiler errors and installation problems

Moderator: bioinf

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Joined: Wed Aug 11, 2021 8:18 am

Error during installation

Post by Manjula »

Dear Kathrina,

I downloaded Augustus from onto Ubuntu16.04 , git cloned then run 'make augustus'.

I am getting the following error.

make augustus
mkdir -p bin
cd src && make
make[1]: Entering directory '/home/thimmamp/bioinformatics_tools/Augustus/src'
g++ -DZIPINPUT -DCOMPGENEPRED -DTESTING -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -I../include -I/usr/include/lpsolve -I/usr/include/mysql -c -o randseqaccess.o
In file included from
../include/randseqaccess.hh:21:29: fatal error: mysql++/mysql++.h: No such file or directory
compilation terminated.
Makefile:85: recipe for target 'randseqaccess.o' failed
make[1]: *** [randseqaccess.o] Error 1
make[1]: Leaving directory '/home/thimmamp/bioinformatics_tools/Augustus/src'
Makefile:11: recipe for target 'augustus' failed
make: *** [augustus] Error 2

Could you please help to get around and go ahead install the tool?

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Joined: Mon Oct 14, 2019 2:24 pm

Re: Error during installation

Post by mehlan »

Please read docs/ in case of installation problems
or try:
sudo apt-get install libmysql++-dev
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