bam2hints compiling error

Discussions about compiler errors and installation problems

Moderator: bioinf

Post Reply
User avatar
katharina
Site Admin
Posts: 531
Joined: Wed Nov 18, 2015 6:14 pm
Location: Greifswald
Contact:

bam2hints compiling error

Post by katharina »

Originally posted by Willow on 21.07.2015 - 05:29

There are 4 files in the bam2hints directory:
bam2hints.cc
bam2hints.o
Makefile
README
After I rewrote the absolute path of bamtools in Makefile,and type make clean,it returned
rm -f bam2hints.o
no executable was created while bam2hints.o removed
User avatar
katharina
Site Admin
Posts: 531
Joined: Wed Nov 18, 2015 6:14 pm
Location: Greifswald
Contact:

Re: bam2hints compiling error

Post by katharina »

Originally posted by katharina in the old forum on 22.07.2015 - 09:20

make clean deleted the *.o files.
Run "make" afterwards to compile bam2hints.
User avatar
katharina
Site Admin
Posts: 531
Joined: Wed Nov 18, 2015 6:14 pm
Location: Greifswald
Contact:

Re: bam2hints compiling error

Post by katharina »

Originally posted by Willow in the old forum on 30.07.2015 - 09:41

Thank you very much!I have done my augustus process.I wonder if augustus can print the gff3 result and CDS separately into two files?
User avatar
katharina
Site Admin
Posts: 531
Joined: Wed Nov 18, 2015 6:14 pm
Location: Greifswald
Contact:

Re: bam2hints compiling error

Post by katharina »

I don't think so. It is possible to extract CDS from the augustus output, afterwards, though.
Post Reply