Page 1 of 1

Error during installation

Posted: Wed Aug 11, 2021 8:25 am
by Manjula
Dear Kathrina,

I downloaded Augustus from https://github.com/Gaius-Augustus/Augustus onto Ubuntu16.04 , git cloned then run 'make augustus'.

I am getting the following error.

make augustus
mkdir -p bin
cd src && make
make[1]: Entering directory '/home/thimmamp/bioinformatics_tools/Augustus/src'
g++ -DZIPINPUT -DCOMPGENEPRED -DTESTING -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -I../include -I/usr/include/lpsolve -I/usr/include/mysql -c -o randseqaccess.o randseqaccess.cc
In file included from randseqaccess.cc:10:0:
../include/randseqaccess.hh:21:29: fatal error: mysql++/mysql++.h: No such file or directory
compilation terminated.
Makefile:85: recipe for target 'randseqaccess.o' failed
make[1]: *** [randseqaccess.o] Error 1
make[1]: Leaving directory '/home/thimmamp/bioinformatics_tools/Augustus/src'
Makefile:11: recipe for target 'augustus' failed
make: *** [augustus] Error 2

Could you please help to get around and go ahead install the tool?

Best,

Re: Error during installation

Posted: Wed Aug 11, 2021 3:31 pm
by mehlan
Please read docs/INSTALL.md in case of installation problems
or try:
sudo apt-get install libmysql++-dev