As everything failed with GeneMark, I tried running this program alone:
gmes_petap.pl --ET hints.gff --sequence R.padi_final_genome.v1.fasta --et_score 10
The error came back as:
"inappropriate ioctl for device"
Discussions about BRAKER, the automated joint usage of GeneMark and AUGUSTUS.
2 posts • Page 1 of 1
Peter reported to us:
Peter reported the following solution:
(http://stackoverflow.com/questions/1605 ... for-device)
which identified this being this problem
(http://www.unix.com/shell-programming-a ... evice.html)
How to fix:
http://askubuntu.com/questions/575505/g ... this-error
sudo apt-get install libstdc++6
This didnt update anything as the latest was already intalled.
sudo add-apt-repository ppa:ubuntu-toolchain-r/test
sudo apt-get update
sudo apt-get upgrade
sudo apt-get dist-upgrade
these fixed the problem.