We are annotating species where we anticipate a substantial percentage of non-canonical splicing e.g. ga-ag I wondered if there were any updates to augustus to support ab intio prediction of splice sites outside of gt-ag and gc-ag. I'm aware there is support for annotating non-canonical sites via hints e.g. viewtopic.php?f=5&t=124&p=490&hilit=canonical#p490
Other groups have made there own edits e.g. https://github.com/chancx/dinoflag-alt-splice but I wanted to see if there was any recent / future changes that would support this.
ab initio prediction of non-canonical splice sites
Moderator: bioinf