Search found 2 matches
- Thu Oct 05, 2017 12:57 am
- Forum: Training AUGUSTUS
- Topic: UTR training error?
- Replies: 4
- Views: 23167
Re: UTR training error?
Update: I changed the lines of code in autoAugTrain.pl responsible of searching the genes with both UTR and writing them into bothutr.lst, and it seems to do the work. open(TR, "tr.lst") or die ("Can not open tr.lst!\n"); open(BOTH, "> bothutr.lst"); my $g; while(<TR>){...
- Tue Oct 03, 2017 11:52 am
- Forum: Training AUGUSTUS
- Topic: UTR training error?
- Replies: 4
- Views: 23167
UTR training error?
Hi, I have used webAugustus for a while for annotating fungal genomes paired with Maker and usually I get no UTR prediction even when using RNA-seq data. I have started to recreate the workflow (based on the logs) on our cluster for convenience, and I found that after running the 6th and last step (...