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Welcome to the Bioinformatics Web Server

This is the web server of the Bioinformatics Group at the Institute for Mathematics and Computer Science at University of Greifswald.

Navigating from this page, you find:


January 2015 - BRAKER1, a pipeline for unsupervised RNA-Seq-based genome annotation with GeneMark-ET and AUGUSTUS is now available for download. An example data set for testing the BRAKER1 pipeline is available, separately (1.1 GB). The PAG 2015 poster about BRAKER is available here.

June 2014 - The source code of the dFe-CRF model for interface site prediction given the PDB-file of one partner chain from within a protein complex is available to download

January 2013 - The ClassyFlu web service for fast Influenza A virus classification is now available at!

December 2012 - The AUGUSTUS training web service moved to a new adress: You find our web server application for training the eukaryotic gene prediction tool AUGUSTUS at!

May 2012 - We developed protocols for integrating RNAseq data into AUGUSTUS gene predictions with GSNAP and Tophat/Bowtie. Instructions are available at Scripts and tools that are not publicly available, yet, are available on request from

The manual generation of hints from ESTs and protein sequences is now also documented in our wiki.

March 2012 - Forum for asking questions about using AUGUSTUS is available at


Institute for Mathematics und Computer Sciences
Walther-Rathenau-Straße 47
17487 Greifswald
Tel.: +49 (0)3834 86 - 46 24
Fax: +49 (0)3834 86 - 46 40