K. J. Hoff, M. Stanke (2013) WebAUGUSTUS - a web service for training AUGUSTUS and predicting genes in eukaryotes
Nucleic Acids Res, Web Server Issue 2013, accepted.
G. Schönknecht, W. H. Chen, C. M. Ternes, G. G. Barbier, R. P. Shrestha, M. Stanke, A. Bräutigam, B. J. Baker, J. F. Banfield, R. M. Garavito, K. Carr, C. Wilkerson, S. A. Rensing, D. Gagneul, N. E. Dickenson, C. Oesterhelt, M. J. Lercher, A. P. Weber (2013) Gene Transfer from Bacteria and Archaea Facilitated Evolution of an Extremophilic Eukaryote Science, Vol. 339 no. 6124 pp. 1207-1210
2012
F. Martin, L. Bovet, A. Cordier, M. Stanke, I. Gunduz, M. Peitsch and N. Ivanov (2012) Design of a tobacco exon array with application to investigate the differential cadmium accumulation property in two tobacco varieties BMC Genomics, 13:674
G. Sablok, A. Sánchez-Paz, X. M. Wu, I. Bulla (2012) Genome dynamics in three different geo-graphical isolates of white spot syndrome virus (WSSV) genome
Archives of Virology, 157(12), 2357-2362
A.-K. Schultz, I. Bulla, M. Abdou-Chekaraou, E. Gordien, B. Morgenstern, F. Zoulim, P. Deny and M. Stanke (2012) jpHMM: Recombination analysis in viruses with circular genomes such as the hepatitis B virus. Nucleic Acids Res, Web Server Issue 2012, 40(W1):W193-W198.
K. K. Dasmahapatra, J. R. Walters, A. D. Briscoe, J. W. Davey, A. Whibley, N. J. Nadeau, A. V. Zimin, D. S. T. Hughes, L. C. Ferguson, S. H. Martin, C. Salazar, J. J. Lewis, S. Adler, S.-J. Ahn, D. A. Baker, S. W. Baxter, N. L. Chamberlain, R. Chauhan, B. A. Counterman, T. Dalmay, L. E. Gilbert, K. Gordon, D. G. Heckel, H. M. Hines, K. J. Hoff, P. W. H. Holland, E. Jacquin-Joly, F. M. Jiggins, R. T. Jones, D. D. Kapan, P. Kersey, G. Lamas, D. Lawson, D. Mapleson, L. S. Maroja, A. Martin, S. Moxon, W. J. Palmer, R. Papa, A. Papanicolaou, Y. Pauchet, D. A. Ray, N. Rosser, S. L. Salzberg, M. A. Supple, A. Surridge, A. Tenger-Trolander, H. Vogel, P. A. Wilkinson, D. Wilson, J. A. Yorke, F. Yuan, A. L. Balmuth, C. Eland, K. Gharbi, M. Thomson, R. A. Gibbs, Y. Han, J. C. Jayaseelan, C. Kovar, T. Mathew, D. M. Muzny, F. Ongeri, L.-L. Pu, J. Qu, R. L. Thornton, K. C. Worley, Y.-Q. Wu, M. Linares, M. L. Blaxter, R. H. ffrench-Constant, M. Joron, M. R. Kronforst, S. P. Mullen, R. D. Reed, S. E. Scherer, S. Richards, J. Mallet, W. Owen McMillan, C. D. Jiggins (2012) Butterfly genome reveals promiscuous exchange of mimicry adaptations among species Nature, doi:10.1038/nature11041
J. Bulla, S. Mergner, I. Bulla, A. Sesboüé, C. Chesneau (2011) Markov-switching Asset Allocation: Do Profitable Strategies Exist?
Journal of Asset Management, 12(5), 310-321
F. Raymond, S. Boisvert, G. Roy, J. F. Ritt, D. Légaré, A. Isnard, M. Stanke, M. Olivier, M. J. Tremblay, B. Papadopoulou, M. Ouellette, J. Corbeil (2011) Genome sequencing of the lizard parasite Leishmania tarentolae reveals loss of genes associated to the intracellular stage of human pathogenic species. Nucl. Acids Res., 1-17, doi:10.1093/nar/gkr834
K. J. Hoff, M. Tech, T. Lingner, R. Daniel, B. Morgenstern, P. Meinicke (2011) Gene prediction in metagenomic fragments with Orphelia: a large scale machine learning, appeared in "Handbook of Molecular Microbial Ecology I: Metagenomic and Complementary Approaches" p. 359-367, DOI: 10.1002/9781118010518.ch41
T. Unterthiner, A.-K. Schultz, J. Bulla, B. Morgenstern, M. Stanke and I. Bulla (2011) Detection of viral sequence fragments of HIV-1 subfamilies yet unknown. BMC Bioinformatics, 12:93
M. Specht, M. Stanke, M. Terashima, B. Naumann-Busch, I. Hanßen, R. Höhner, E.F.Y. Hom, C. Liang, M. Hippler (2011) Concerted action of the new Genomic Peptide Finder and AUGUSTUS allows for automated proteogenomic annotation of the Chlamydomonas reinhardtii genome. Proteomics, 11(9)1814-1823
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