Please see:
https://sourceforge.net/p/evidencemodel ... rs/?page=2
https://github.com/Gaius-Augustus/BRAKER/issues/484
searching for "is described multiple times"
It might be useful to post this question to https://github.com/EVidenceModeler/EVidenceModeler
Search found 8 matches
- Mon Mar 27, 2023 11:09 am
- Forum: Predicting Genes with AUGUSTUS
- Topic: Error while Running EVM with AUGUSTUS output
- Replies: 0
- Views: 18219
- Mon Jan 09, 2023 2:56 pm
- Forum: Predicting Genes with AUGUSTUS
- Topic: Filterbam error of segmentation fault
- Replies: 3
- Views: 11691
Re: Filterbam error of segmentation fault
As far as I can see, the problem is a segmentation fault in the execution of line filterBam --uniq --paired --in $outputDIR1/accepted_hits.s --out $outputDIR1/accepted_hits.sf.bam I don't know what is going wrong. You can try with filterBam --verbose --uniq --paired --in $outputDIR1/accepted_hits.s ...
- Mon Dec 13, 2021 2:20 pm
- Forum: WebAUGUSTUS
- Topic: how to use webAUGUSTUS-derived parameters in local version
- Replies: 2
- Views: 14380
Re: how to use webAUGUSTUS-derived parameters in local version
download the "Species parameter archive" (parameters.tar.gz) from the webAUGUSTUS training page unpack parameters.tar.gz and place the contained folder into the local Augustus "Species" folder (probably in config/species) use the folder name as argument for the augustus --specie...
- Thu Nov 18, 2021 2:42 pm
- Forum: WebAUGUSTUS
- Topic: URL error - FASTA format
- Replies: 4
- Views: 22009
Re: URL error - FASTA format
Please note the restrictions for the DNA fasta file format: https://bioinf.uni-greifswald.de/webaugustus/predictiontutorial#genome_file Reasons why the error message "The provided genome file "input.fasta" is not in DNA Fasta format" is displayed: the first line is not a header l...
- Wed Aug 11, 2021 3:31 pm
- Forum: AUGUSTUS Compilation/Installation
- Topic: Error during installation
- Replies: 1
- Views: 15850
Re: Error during installation
Please read docs/INSTALL.md in case of installation problems
or try:
sudo apt-get install libmysql++-dev
or try:
sudo apt-get install libmysql++-dev
- Thu Mar 25, 2021 8:26 am
- Forum: Training AUGUSTUS
- Topic: Species File Failing in MAKER
- Replies: 1
- Views: 9846
Re: Species File Failing in MAKER
The line
Please check this for all input files.
For example for the files in the species folder use:
may show that not all input files are in ASCII format.Invalid nucleotide '�' encountered.
Please check this for all input files.
For example for the files in the species folder use:
Code: Select all
$ find species -type f -print0 | xargs -0 file
- Thu May 28, 2020 2:16 pm
- Forum: WebAUGUSTUS
- Topic: Trouble with prediction submission
- Replies: 1
- Views: 7105
Re: Trouble with prediction submission
WebAUGUSTUS retrieves large files from a public web link. This web link points directly to the file, e.g. https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/013/425/GCF_000013425.1_ASM1342v1/GCF_000013425.1_ASM1342v1_genomic.fna.gz or http://bioinf.uni-greifswald.de/webaugustus/examples/LG16.fa When p...
- Mon Oct 14, 2019 2:26 pm
- Forum: Training AUGUSTUS
- Topic: Training Histomonas failed
- Replies: 1
- Views: 7277
Re: Training Histomonas failed
Sorry, we had a misconfiguration in our augustus training pipeline, which is now fixed.
Sorry for any inconvenience
Sorry for any inconvenience