Would someone point me to documentation about the the meaning of the attributes string (column 9) of the GFF gene prediction output?
e.g., grp=R0055;pri=4;src=E "2.73287e+07;1;61:0"
I especially don't understand "1;61:0".
Search found 3 matches
- Sat Apr 20, 2019 1:03 am
- Forum: Predicting Genes with AUGUSTUS
- Topic: meaning of attribues in GFF output
- Replies: 0
- Views: 26473
- Thu Feb 04, 2016 8:41 pm
- Forum: WebAUGUSTUS
- Topic: quwstion about outfile
- Replies: 4
- Views: 10827
Re: quwstion about outfile
I don't know if this is the only way it is done, but it looks like the .gtf file is simply the .gff lines that match /\tAUGUSTUS\t/. At least, that is how autoAugPred.pl does it.ddrddr wrote:Would you tell me how the .gtf file is made? I see a gtf2gff.pl script but not the other way.
- Thu Feb 04, 2016 8:18 pm
- Forum: WebAUGUSTUS
- Topic: quwstion about outfile
- Replies: 4
- Views: 10827
Re: quwstion about outfile
Would you tell me how the .gtf file is made? I see a gtf2gff.pl script but not the other way.