Search found 2 matches
- Tue Jan 04, 2022 5:39 pm
- Forum: Training AUGUSTUS
- Topic: Problem with training gene structures
- Replies: 1
- Views: 12682
Re: Problem with training gene structures
I think I'm getting closer. During the run of gtf2aa.pl the message appears: ... Use of uninitialized value $txid in hash element at /usr/share/augustus/scripts/gtf2aa.pl line 42, <GTF> line 170407. Use of uninitialized value $txid in hash element at /usr/share/augustus/scripts/gtf2aa.pl line 42, <G...
- Mon Jan 03, 2022 2:26 pm
- Forum: Training AUGUSTUS
- Topic: Problem with training gene structures
- Replies: 1
- Views: 12682
Problem with training gene structures
Hi, I have already asked this question on github. Maybe someone can help me here. I want to generate training gene structures from assembled NovaSeq sequence data and PacBio (Sequel II) genome sequences. I followed the procedures in the “augustus.wrp.pdf” and stuck at: :$ gtf2aa.pl genome.fa bonafid...