AUGUSTUS Forum

I think I'm getting closer. During the run of gtf2aa.pl the message appears: ... Use of uninitialized value $txid in hash element at /usr/share/augustus/scripts/gtf2aa.pl line 42, <GTF> line 170407. Use of uninitialized value $txid in hash element at /usr/share/augustus/scripts/gtf2aa.pl line 42, <G...

Hi, I have already asked this question on github. Maybe someone can help me here. I want to generate training gene structures from assembled NovaSeq sequence data and PacBio (Sequel II) genome sequences. I followed the procedures in the “augustus.wrp.pdf” and stuck at: :$ gtf2aa.pl genome.fa bonafid...