Search found 2 matches
- Tue Jun 28, 2016 11:47 am
- Forum: Training AUGUSTUS
- Topic: Error when using filterBam on gsnap bam files
- Replies: 2
- Views: 9447
Re: Error when using filterBam on gsnap bam files
Could this actually be the result of my READ not having an /1,/2 at the end of the header?
- Mon Jun 27, 2016 3:20 pm
- Forum: Training AUGUSTUS
- Topic: Error when using filterBam on gsnap bam files
- Replies: 2
- Views: 9447
Error when using filterBam on gsnap bam files
Hi! I am following this protocol http://bioinf.uni-greifswald.de/bioinf/wiki/pmwiki.php?n=IncorporatingRNAseq.GSNAP and am getting a "wrong" output from this step filterBam --uniq --paired --in rnaseq.ss.bam --out rnaseq.f.bam. My version is augustus3.0.3 My input bam file looks like this:...