AUGUSTUS Forum

Could this actually be the result of my READ not having an /1,/2 at the end of the header?

Hi! I am following this protocol http://bioinf.uni-greifswald.de/bioinf/wiki/pmwiki.php?n=IncorporatingRNAseq.GSNAP and am getting a "wrong" output from this step filterBam --uniq --paired --in rnaseq.ss.bam --out rnaseq.f.bam. My version is augustus3.0.3 My input bam file looks like this:...