Hello,
I would like to use Augsutus after MAKER's output.
What I got is a genome file and a protein file.
Is it possible to train my data without using the web service ? If yes what would be the command line ?
Thanks for your help.
Local command line
Moderator: bioinf
Re: Local command line
The tool behind WebAUGUSTUS is autoAug.pl.
You find it - including the command line if you call it with --help parameter, at http://bioinf.uni-greifswald.de/augustu ... ent.tar.gz in the scripts folder.
Required software - besides AUGUSTUS - are PASA and Scipio. Please read the installation instructions for AutoAug.pl http://bioinf.uni-greifswald.de/augustu ... ME.autoAug .
You find it - including the command line if you call it with --help parameter, at http://bioinf.uni-greifswald.de/augustu ... ent.tar.gz in the scripts folder.
Required software - besides AUGUSTUS - are PASA and Scipio. Please read the installation instructions for AutoAug.pl http://bioinf.uni-greifswald.de/augustu ... ME.autoAug .