Originally posted in the old forum by Marie on 04.11.2014 - 17:20
Hello !
I was wondering if it is possible to run autoAug.pl using several CPUs ?
Thanks !
running autoAug.pl on several CPUs
Moderator: bioinf
Re: running autoAug.pl on several CPUs
by katharina on 19.11.2014 - 17:37
It is possible to run autoAug.pl with a Sun Grid Engine, which distributes parts of autoAug.pl to several single CPU slots.
optimize_augustus.pl, which is called by autoAug.pl can be run on several CPUs, but you'd need to call it outside of autoAug.pl, or alter the call in the autoAug.pl script.
Katharina
It is possible to run autoAug.pl with a Sun Grid Engine, which distributes parts of autoAug.pl to several single CPU slots.
optimize_augustus.pl, which is called by autoAug.pl can be run on several CPUs, but you'd need to call it outside of autoAug.pl, or alter the call in the autoAug.pl script.
Katharina