Originally posted in the old forum by Han on 26.02.2013 - 06:28
Hi,
I'm working on a primate genome, previously I run augustus for gene prediction and it's works well. Now I want to use augustus to do gene prediction and include the cdna file. I've download human cdna file form ensemble.
Is this correct?
by Han on 28.02.2013 - 14:02
at the 3rd steps: Creates hints: I got this message: blat2hints.pl: command not found. any idea? I've copied the blat2hints.pl to my directory.
by katharina on 01.03.2013 - 15:22
Have you made it executable (e.g. using chmod)? Have you called it with its explicit path (if it was not added to your PATH variable), e.g. ./blat2hints.pl if it is located in the folder that you are currently working in?
Katharina